Multimedia Gallery

3D Reconstruction of Neuron Morphology and Microvasculature

Click on the images to view the full-sized version.

 

Cerebella Purkinje cells from our whole brain Golgi data set.
[WMV movie] (13 MB) NEW 11/21/08
Cortical pyramidal cells from our whole brain Golgi data set.
[WMV movie] (9.6 MB)NEW 11/21/08
Vasculature visualization (india ink, close-up to show fine detail). This is from the same data set below. Approximate volume is about 500 um x 500 um x 500 um.
[WMV movie] (11.7MB)
NEW 11/21/08
Whole brain vasculature visualization (india ink, subsampled to show entire brain).
[WMV movie] (7.2MB)
NEW 11/21/08
Neuron reconstruction from Golgi data.
[AVI movie] (2.8MB)
11/8/05
Soma reconstruction from Nissl data. The cubic volume is 300 um on each side.
[AVI movie] (3.9MB)
8/31/05
Blood vessel (red/transparent), endothlial cell (purple), and soma (green) reconstruction from Nissl data. The cubic volume is 300 um on each side.
[Quicktime movie](7.1MB) [AVI movie](13.4MB)
7/7/05
Blood vessel reconstruction from Nissl data. The cubic volume is 0.3 mm on each side.
[AVI movie](38.5MB) [Smaller version AVI movie](5.8MB)
7/7/05
Blood vessel (red) and endothilial cell (blue) reconstruction from Nissl data. The cubic volume is 300 um on each side.
7/7/05
3D visualization of Golgi-stained cell (close-up view). Click to view a larger version.
7/7/05
3D visualization of Golgi-stained cell. Click to view a larger version.
7/7/05
3D visualization of Golgi-stained cell (generated using Amira).
[Large AVI movie] (2.6MB) [Small AVI movie] (1.26MB).
Different encoding: [Large AVI movie] (10.6MB) [Small AVI movie] (3.6MB).
New 3/11/05 Check back soon for new data (7/15/2005)
3D reconstruction of fibers in zebrafish tectum at EM level. SBF-SEM data courtesy of Stephen J. Smith (Stanford), and Winfried Denk (Max Planck Instituite Heidelberg).
[AVI movie] (2.2MB) (Reconstructed with in-house software and rendered in Maya.). Different encoding: [AVI movie] (4.5MB).
New 3/11/05 Check back soon for new data (7/15/2005)
3D visualization of Nissl-stained hippocampal cells (generated using Amira).
[AVI Movie] (6MB) (The movie used the same dataset, but was rendered differently.) Check back soon for new data (7/15/2005)
Closeup of the hippocampus (generated using Amira).
[AVI Movie] (6MB) (The movie used the same dataset, but was rendered differently.) Check back soon for new data (7/15/2005)