Figure S4: Top motif from PosMotif2 on samples that contain at least three genes in the SCPD database in Tompa's format

>data set
abf1_baf1
>instances
YAL038W,-837,CGTCGGTTGTGA
YAL038W,-608,TCTCTCGCAACG
YAL038W,-522,CACGTGGGTCG
YBR031W,-533,TCACCCTCAACGTG
YBR031W,-181,TCACGTCACACG
YBR248C,-639,CGTTGTTTGTGA
YBR248C,-282,CACTGATTTCG
YBR248C,-199,TCTCTCTCCACG
YCL064C,-502,TCTCTGCTGACG
YCL064C,-266,TCACCGCGAACG
YCR012W,-552,TCATAAAGCACGTG
YCR012W,-514,CGTCGCTCGTGA
YDL140C,-860,TCAAGAAGTACGAG
YDL140C,-694,TCACTAAAGACG
YFL018C,-452,TCAGCACAAACGTG
YFL018C,-268,CACGTGAATCG
YFL038C,-916,CACAGACAACG
YFL038C,-649,CACGTTGCCCG
YFL038C,-187,TCACTGTACACGTATATCGTGA
YGL234W,-207,CGTCGGTAGTGA
YGL234W,-72,CACTAGTAGCG
YGR059W,-991,CACCTGCTTCG
YGR059W,-314,CGTATTTAGTGA
YHR051W,-495,CACCGTGCTCG
YHR051W,-300,TCGCTCCATACG
YHR174W,-507,TCACTAACGACGTG
YHR174W,-432,CACACCGCACG
YIL160C,-280,CACAAATAGCG
YJL166W,-246,CGTTCCACGTGA
YKL112W,-325,TCACTGTTAACGAG
YKL112W,-64,CGTTATCTGTGA
YKL182W,-773,TCACGATACACGAG
YLR203C,-852,CACTCCACACG
YLR203C,-338,CACCCAGGTCG
YLR204W,-922,TCAATGAATACGGG
YLR204W,-407,CGTGTTTGGTGA
YOR116C,-377,TCACTATATACGTG
YPR110C,-842,CACCTGCTTCG
YPR110C,-131,CGTTTATAGTGA
>data set
bas1_pho2
>instances
YBR093C,-249,TGGGACTAGCACAGAC
YBR248C,-382,TTCCTCTACCACTGCC
YCL030C,-304,TGCCCCCATCACAATC
YDL227C,-330,TGCTACTATCACCCAC
YGL234W,-918,TTGCACGAACACTTAC
YOR128C,-836,TTCGACCAACACTTCC
>data set
car1
>instances
YAL038W,-857,TAGCCGCC
YDR256C,-566,TAGCCG
YDR256C,-285,AGCCGC
YDR256C,-250,TAGCCGC
YGL073W,-611,AGCCGCC
YGR088W,-184,TAGCCG
YGR254W,-594,AACCGCC
YGR254W,-220,TAGCCACC
YGR264C,-671,TAGCCG
YGR264C,-245,TAGCCGCCGA
YML054C,-167,AACCGCC
YMR108W,-484,TAGCCGCCG
YOL006C,-826,TAGCCACC
YOL006C,-448,TAGCCGCCGA
YPL111W,-157,TAGCCGCCGA
>data set
cpf1
>instances
YCR012W,-404,CTAGCGA
YOR065W,-989,CTAGCGA
YPR167C,-948,CTAGCGA
>data set
csre
>instances
YER065C,-181,CCAGGCACATCGGAA
YKR097W,-623,CAGGCCTTGTCGGAA
YLR377C,-657,CCTGACATTTCGGTA
YNL117W,-815,CGTGTCGTAGCGGCA
YNL117W,-451,CCCGGCGAGCCGGCA
>data set
gal4
>instances
YBR018C,-882,CGGTGATTTCTTGTCTG
YBR018C,-279,CGGAGCACTGTTGAGCG
YBR018C,-192,CGGACAACTGTTGACCGTGATCCG
YBR019C,-333,CGGAGCAGTGCGGCGCG
YBR019C,-288,CGGTGAAGACGAGGACG
YBR019C,-269,CGGAGGAGAGTCTTCCG
YBR019C,-251,CGGAGGGCTGTCGCCCGCTCGGCGGCTTCTAATCCGT
YBR020W,-453,CGGATTAGAAGCCGCCG
YBR020W,-434,CGGGCGACAGCCCTCCG
YBR020W,-416,CGGAAGACTCTCCTCCGTGCGTCCTCGTCTTCACCG
YBR020W,-352,CGCGCCGCACTGCTCCG
YLR081W,-709,CGGGCTGTACTAATCC
YLR081W,-530,CGGAAAGCTTCCTTCCG
YLR081W,-416,CGGCGGTCTTTCGTCCGTGCGGAGATATCTGCGCCGT
YLR081W,-333,CGGGGCGGATCACTCCGAACCG
YML051W,-711,CCGTTGTCTTGCAAACG
YML051W,-172,CGGCGCACTCTCGCCCGAAC
YML051W,-34,CGATAGTTGGTTTCCCG
YOR120W,-369,CGGGGCAGACTATTCCG
YOR120W,-336,GGCGGTCTTTTCTCC
>data set
gata
>instances
YDL210W,-481,GCGTATCT
YDL210W,-427,TCGCTTATCGCTTATC
YIR032C,-38,GCTTATCT
YJL110C,-167,TCGCTTATCT
YJL110C,-156,CGCTTATC
YKR034W,-228,GCTTATCT
YKR039W,-552,TCGCTTATCT
YKR039W,-294,GCTTATCT
>data set
gcn4
>instances
YBR248C,-457,CTGCTGCTG
YCL030C,-769,CAGCTAC
YCL030C,-381,CTGCACCAG
YDR354W,-694,CAGCAAC
YDR354W,-65,CAGCTACTG
YER086W,-925,CTGCCCCTG
YER086W,-441,CCGCAACAG
YMR108W,-126,CAGCCACAG
YMR300C,-124,CAGCCACCG
YOL058W,-414,CAGCCACTG
YOL140W,-952,CAGCTACTG
YOR202W,-681,CAGCAACCG
YOR202W,-648,CAGCAAC
>data set
gcr1
>instances
YAL038W,-595,CGGGATTCCT
YCR012W,-641,CGCGAATCCT
YGR254W,-229,CGTGATTCCT
YOL086C,-652,CGGGATTCCT
>data set
gln3
>instances
YDL215C,-555,CATTGGCGGCCT
YDL215C,-222,CAACGGCGGCAT
YGR019W,-412,CGTCGGCGATTT
YGR019W,-381,CGCGGGCGGGAT
YPR035W,-972,CGGCGGCGGAAT
YPR035W,-825,CAATGGCGCTTT
>data set
hap1
>instances
YEL039C,-623,CCGGGGAGTCC
YGR088W,-431,CCGTTATCTCC
YJR048W,-360,CCGATCTTTCC
YML054C,-236,CCGATATCTCC
YOR065W,-505,CCGGTATTTCC
>data set
hap2_hap3_hap4
>instances
YHR051W,-851,TTGAGAAGATCCGCCA
YJR048W,-249,TCGAGCAGATCCGCCA
>data set
hse_hstf
>instances
YAL005C,-354,TTCTAGAA
YBR072W,-867,TTCTAGAA
YBR072W,-354,TTCTAGAA
YER103W,-253,TTCTAGAA
YHR053C,-229,TTCTAGAA
YMR186W,-217,TTCTAGAA
YNL007C,-835,TTCTAGGA
>data set
matalpha1
>instances
YPL187W,-367,ACTTTCCTAATTAGTCCTTCAA
YPL187W,-314,ACCTTCCTAATTAGGCCATCAA
>data set
matalpha2
>instances
YDR461W,-232,TGTAATTACCCAAAAAGGAAATT
YIL015W,-262,TGTAATTACCGTAAAAGGAAATT
YKL209C,-210,TGTAATTACCTAATAGGGAAATT
YNL145W,-249,TGTATTTACCTATTCGGGAAA
>data set
mcb
>instances
YDL102W,-637,CGCGT
YDL102W,-166,ACGCGTAA
YDL164C,-133,ACGCG
YDL164C,-125,ACGCGTGA
YJL194W,-405,ACGCG
YJL194W,-216,ACGCG
YJL194W,-204,ACGCGT
YMR199W,-779,CGCGT
YMR199W,-606,ACGCGT
YMR199W,-555,CGCGT
YNL102W,-801,ACGCGT
YNL102W,-208,ACGCGTTA
YNL102W,-173,ACGCGTCGCGT
YOR074C,-158,ACGCGTTA
YOR074C,-121,ACGCGT
>data set
mcm1
>instances
YAL040C,-958,ATTTCCCAAATTGGAAA
YAL040C,-905,TTACCCGTTTAGGAAA
YAL040C,-683,TTTCCTTCTGGGGAA
YAL040C,-500,ATTTCCATATTTGG
YAL040C,-119,ATTTCCTCATTCGG
YBR160W,-927,TTCCATTTTTGGAAA
YBR160W,-742,CCACTTTTGGCTA
YBR160W,-234,ATGGCCTTATTAGGGCA
YBR202W,-229,TTACCCAGAAAGGAAATTTCCTTATAAGGAAA
YDR146C,-367,TCCCAATCCGGGCAA
YDR146C,-320,TAACCTGTTTAGGAAA
YDR403W,-766,TTCCTCTTGTGG
YDR403W,-606,CCCTGGAAGGAAA
YDR403W,-41,ATATCCTAATTCGGTAA
YDR461W,-228,ATTACCCAAAAAGGAAA
YER111C,-558,TACCTTCGGCGGCTA
YER111C,-453,TTTCCCGTTTAGGAAA
YFL026W,-222,ATTTCCTAATTGGGTAA
YFL026W,-73,TCACCTGCTCTGGCTA
YGL008C,-932,TTCCTGAAACGGAGA
YGL008C,-868,TGACCTTTTCCGGTAA
YGL008C,-710,ATTTCCTAATGCGGCA
YGL089C,-589,TCACCGTTTCGGGAAA
YGL089C,-491,ATGTCCCTAAAAGG
YGR108W,-616,CCCAAAGAGGAAA
YGR108W,-426,TTCCGCATACGG
YIL015W,-483,CCGTTGAAGGAAA
YIL015W,-258,ATTACCGTAAAAGGAAA
YJL157C,-416,TTTCCAAGTAAGGAAA
YJL157C,-256,TACCTAAAAAGGAAA
YJL159W,-490,TGCCCAATTAGGCGA
YJL159W,-383,TTTCCTATTTCGGAAA
YJL159W,-288,TTACCAGATCAGGAAA
YJL194W,-408,CCGACGCGGGTAA
YJL194W,-193,TTTCCAGATCAGGAAATTACCCACTTAGGAAA
YKL209C,-974,TTCCGCTTTAGGGCA
YKL209C,-455,ATTCCCACAGAGGGCA
YKL209C,-263,TTCCACAAAGGGTAA
YKL209C,-206,ATTACCTAATAGGGAAA
YKR066C,-991,ATTACCAAAGCCGG
YKR066C,-928,CCAACTTCGGGAA
YKR066C,-126,TTACCAATTTAGGAAA
YKR097W,-541,ATTTCCTAATTTGGATA
YLR274W,-154,TTTCCCTTTTAGGAAA
YNL145W,-413,TACCGTTTATGGTA
YNL145W,-244,TTACCTATTCGGGAAA
YNL277W,-663,TTGCCTATTATGGACA
YPL187W,-483,ATTTCCGAATTAGGAA
YPL187W,-311,TTCCTAATTAGGCCA
YPR113W,-984,ATGACCAAATTTGG
YPR113W,-183,TCCCTATTACGGAAA
YPR119W,-794,TTCCAAATGCGGGTA
YPR119W,-749,CCCGTTTAGGAAA
YPR119W,-688,ACCGAATCAGGAAA
YPR119W,-543,TAACCTCTTTGGGGAA
>data set
mig1
>instances
YBR019C,-251,CGGAGGGCTG
YBR020W,-434,CGGGCGACAG
YDR009W,-288,CGGTCCACTG
YDR146C,-621,CGGCAGTCAG
YIL162W,-948,CGGAGGTCTG
YIL162W,-752,CGGTGAGCTG
YKL109W,-763,CGGCGTTCAG
YLL043W,-215,CGGGGAACAG
YLR377C,-432,CGGACACCCG
YPL248C,-654,CGGTAAACGG
>data set
pdr3
>instances
YBL005W,-226,TTTCCGCGGA
YBL005W,-193,TTTCCGCGGAAT
YDR011W,-731,TCCACGGCA
YDR011W,-586,TTTCCGCGGA
YDR406W,-442,TCCGCGGGAT
YDR406W,-380,TTCCGCGGA
YGR281W,-401,TCCGTGGAA
YJL219W,-534,TCTCCGCGGAAT
YJL219W,-328,TCCGTGGAA
YOL156W,-536,TCTCCGCGGAAT
YOL156W,-328,TCCGTGGAA
YOR153W,-493,TTTCCGCGGAAT
YOR153W,-375,TCCGTGGAA
YOR153W,-315,TCTCCGCGGAA
>data set
pho2
>instances
YDL227C,-664,CATGTGCGTCACGAAAAAAGA
YDL227C,-607,CATGTGTGTCACGAAAAGTGA
>data set
pho4
>instances
YBR093C,-727,AGAAACGTG
YDR481C,-383,AGAAACGTG
YGR233C,-11,ATAAACGTG
YML123C,-265,AAAAACGTG
>data set
rap1_ebf1
>instances
YAL038W,-653,CACCCAGACAT
YBR093C,-259,CACTCACACGT
YBR118W,-900,CACCCAAACAT
YBR118W,-436,CACCCACACAT
YBR118W,-420,CACCCAGAC
YCL030C,-819,AACGCAGACA
YCL030C,-420,CACAAACA
YCL030C,-211,ACCCATGCA
YCR012W,-473,AACCCAGACA
YCR012W,-224,CTCACACA
YDR050C,-20,AACACATACAT
YGR085C,-238,AACCCATACAT
YGR254W,-468,CACCCAAACA
YGR254W,-20,CACACAAACA
YIL033C,-415,ACCCAATCA
YIL033C,-72,CACGCATACAT
YJL026W,-614,CACACAAACA
YJL026W,-600,AACACATACA
YJL026W,-409,CACCCAGACCT
YJR073C,-154,AACCCACACATGCA
YLR044C,-827,CTCATACA
YLR044C,-633,CACCCATACCT
YLR044C,-20,ACACAGTCA
YPR080W,-422,CCCACACA
YPR080W,-332,ACCCAAGCA
>data set
reb1
>instances
YCR012W,-707,ATTACTCG
YCR012W,-558,TTACCC
YDL140C,-727,TAACCCG
YDL140C,-714,CATTACCCG
YDL140C,-23,TTACCC
YDL164C,-529,TTACCAG
YDL164C,-353,CATTACCCG
YDR007W,-342,ACCCG
YDR007W,-319,TCACCCG
YDR050C,-399,ATTACCCG
YER086W,-674,ACCCG
YER086W,-445,TTTCCCG
YFL039C,-407,TCACCCG
YFL039C,-379,CTTTACCCG
YGL026C,-167,ATTACCCG
YKL182W,-857,ACCCG
YNL216W,-754,TTACCGG
YNL216W,-228,TACCCG
YOL004W,-408,TTACGCG
YOL004W,-372,TTACCCG
YOL004W,-79,TTACCC
YOL006C,-953,CATTACCCG
YOL006C,-544,ACCCG
YOL006C,-88,TTACCTG
YPL231W,-298,CATTACCCG
>data set
rox1
>instances
YDR044W,-192,TGCTTTGCCCATTGTTCT
YDR044W,-134,TTTTCCACCTATTGTCTT
YJR047C,-291,TTTTCGCCCTATTGTTCT
YJR047C,-203,TGGTAAACTCATTGTTGT
YPR065W,-370,TCTTCCTCGTATTGTCTT
YPR065W,-202,TTATTTGCTAATTGTAGT
>data set
rp-a
>instances
YIL160C,-395,CGGGGA
YIL160C,-188,CGGGGA
YKR009C,-271,CGGGGA
YKR009C,-203,CGGGGA
>data set
scb
>instances
YDL227C,-860,CACGAAAACTG
YDL227C,-790,CACGAAAAGTG
YDL227C,-757,CACGAAAATGA
YDL227C,-655,CACGAAAAAAG
YDL227C,-598,CACGAAAAGTG
YDL227C,-464,CACGAAA
YDL227C,-432,CACGAAAATCA
YDL227C,-398,CGCGAAAAT
YDL227C,-249,CACGAAA
YMR199W,-792,CACGAAA
YMR199W,-452,CTCGAAAGTGA
YMR199W,-435,CTCGAAAATTA
YMR199W,-306,CTCGATATT
YPL256C,-606,CGCGAAATT
YPL256C,-581,CACGAAATTCG
YPL256C,-538,CACGAAACGCG
>data set
sff
>instances
YDR146C,-850,ACTACTTTCGTAC
YDR146C,-809,AGTAATTTTGTGC
YGR108W,-825,ATTAATTATGTGC
YGR108W,-52,AATATTTTCGTCC
YPR119W,-894,AAAAATTAAGTGC
YPR119W,-382,ATTAATTTTGTCC
YPR119W,-161,TATTTTTGTCC
>data set
ste12_pre
>instances
YCL027W,-187,ATGAAACAA
YCL027W,-159,TGAAACAA
YDR461W,-749,ATGAAACAA
YFL026W,-324,ATGAAACAA
YFL026W,-198,ATGAAACA
YNL145W,-365,TGAAACAA
YNL145W,-196,ATGAAACA
>data set
taf
>instances
YJL166W,-102,ATCTCTCGAACATT
YJR048W,-684,CTCGAGAACAAT
YJR048W,-655,AACGAACGAACAAT
YOR063W,-299,ACTCACGCACACT
YOR063W,-255,ACCGGCCGGACAGT
YPR191W,-575,AACTCGCGCACACT
>data set
tata_tbp
>instances
YBR093C,-563,CGCCGGAGACCG
YDL210W,-408,CGCCAAAAACCG
YJL153C,-511,CGCCGTAGACCG
YPL256C,-529,CGCCAAAAACCG
>data set
uascar
>instances
YLR438W,-193,CCCCTGCCGTTAGCGGC
YLR438W,-152,CCCTTGCCCTTAGCGGC
>data set
uash
>instances
YBR019C,-233,TCGGCGGCT
YBR020W,-444,AGCCGCCGA
YDR207C,-438,TGGGCGGC
YDR285W,-22,TCGGCGGCTAAAT
YER044C,-98,TGGGCGGCTAAAT
YER179W,-140,TAGCCGCCCA
YHR014W,-933,TTGGTGGCT
YHR014W,-97,TAGCCGCCGA
YHR153C,-90,TGGGCGGCTAAA
YHR157W,-815,GTCGGCTA
YHR157W,-93,TTGGCGGCTATTT
YIL072W,-531,TAGCCGCCGA
YIL072W,-173,TGGGCGGCTAAAT
YLR263W,-692,TTGGCGACTAGA
YLR263W,-167,TCAGCGGCTAA
YMR133W,-94,TGGGCGGCTAACT
YNL210W,-112,TAGCCGCCGA
YNL307C,-435,TCCGCTGCTA
YOR351C,-148,GGCGGCTAAAT
YOR351C,-136,TCGGCGGCTATTT
>data set
uasphr
>instances
YDL200C,-74,CGGCGCTA
YBR114W,-92,CGACGTAA
YDR217C,-508,CGACGAAA
YEL037C,-546,CGACGGCA
YER095W,-811,CGTCGGTA
YER095W,-670,CGACGATA
YER142C,-144,CGACGGGA
YER162C,-118,CGGCGGAA
YGL058W,-538,CGTCGCTA
YJL026W,-777,CGACGAAA
YJR035W,-493,CGTCGACA
YJR052W,-493,CGACGATA
YML032C,-966,CGACGACA
YML032C,-223,CGTCGCTA
YNL250W,-15,CGACGGAA
YOR386W,-498,CGGCGCTA
YPL022W,-964,CGTCGTAA
>data set
uis
>instances
YIR028W,-570,TTTGCGCCTATTCGATGATC
YIR029W,-236,TTTGAGCCTATCAGAACTCC
YIR031C,-635,TTTGTGCCTATGGGGAGAAC
>data set
urs1h
>instances
YDR285W,-22,TCGGCGGCTAAAT
YER044C,-98,TGGGCGGCTAAAT
YER179W,-730,GGTGTCTA
YER179W,-440,GACGTCTA
YER179W,-140,TAGCCGCCCA
YHR014W,-97,TAGCCGCCGA
YHR153C,-90,TGGGCGGCTAAA
YHR157W,-815,GTCGGCTAA
YHR157W,-322,GGAGACTA
YHR157W,-93,TTGGCGGCTATTT
YIL072W,-531,TAGCCGCCGA
YIL072W,-173,TGGGCGGCTAAAT
YJL106W,-550,GGCGGCTATTT
YJL106W,-457,TCGGCGGCAAA
YLR263W,-692,TTGGCGACTAGA
YLR263W,-467,GGCGACT
YLR263W,-167,TCAGCGGCTAAAT
YMR133W,-94,TGGGCGGCTAACT
YNL210W,-428,GGTGACTA
YNL210W,-112,TAGCCGCCGA
YOR351C,-148,GGCGGCTAAAT
YOR351C,-136,TCGGCGGCTATTT
YPL111W,-916,GGCGACT
YPL111W,-556,GCGGCGA
YPL111W,-259,CGGCTA
YPL111W,-157,TAGCCGCCGAGGGGTCTA